initial

compendium.tex

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+% MAIN FILE
+
+\input{jjpackages.tex}
+
+
+\usepackage{forest}
+\tikzset{
+	comment/.append  style={label={[font=\small]0:#1}},
+}
+\forestset{
+	/tikz/label position=below left,
+	/tikz/label distance=.1em,
+	dot/.style={tikz+={\fill[fill=#1] (.child anchor) circle[radius=2pt];}},
+	dot/.default=black,
+	bar/.style={tikz+={\draw[color=#1,line width=2pt] let \p1 = (!u.parent anchor), \p2 = (.child anchor) in ($(\x1, \y2 - 0.5em)!0.5!(\x2, \y2)$) -- ($(\x1, \y2 + 0.5em)!0.5!(\x2, \y2)$);}},
+	bar/.default=black,
+}
+\definecolor{treeedgeclr}{RGB}{80, 80, 80}
+
+
+\usepackage{pdfpages}
+
+
+%opening
+\title{Botanik \& Systematik der Pflanzen}
+	\author{Jeff Jonczyk}
+
+\begin{document}
+
+\maketitle
+
+\section*{Einleitung}
+
+\newpage
+
+\tableofcontents
+
+\newpage
+
+\section[Systematik der Pflanzen]{Spezieller Teil: Systematik der Pflanzen}
+\subsection{Prokaryota, Eukaryota \& Archea}
+
+\begin{figure}[!ht]
+	\centering
+	\input{trees/basetree.tex}
+\end{figure}
+
+
+
+
+\section[Allgemeine Phylogenetik]{Allgemeiner Teil: Phylogenetik}
+
+
+
+\end{document}

forest/base.tex

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+%base tree
+\begin{forest}
+	% BEGIN treeconf.tex
+	where n children=0{tier=word}{},
+	for tree = {
+		%s sep=-0.1em,
+		grow = 0, % 0 deg = right
+		reversed,
+		align=left,
+		parent anchor=east,
+		child anchor=west,
+		anchor=west,
+		edge path={
+			\noexpand\path[draw, ptclredge, line width=1.2pt, \forestoption{edge}]
+			(!u.parent anchor) |- (.child anchor)\forestoption{edge label};
+		},
+		before typesetting nodes={
+			if content={}{shape=coordinate}{}
+		},
+	} % END treeconf.tex
+	[[
+	[Prokaryota]
+	[
+	[Archea]
+	[,label=Eukaryota, dot[
+		[, label=Planta, dot
+			[Rhodophyta (Rotalgen)]
+			[, label=Grünpflanzen, dot
+				[Chlorophyta]
+				[Embryophyta]
+			]
+		]
+		[]
+	]]
+	]
+	]]
+\end{forest}

forest/phyloforest-template.tex

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+% phyloforest-template.tex
+% Template for a phylogenetic tree using forest
+
+\begin{forest}
+	% <tree layout>
+	where n children=0{tier=word}{},
+	for tree = {
+		s sep=-0.1em,
+		grow = 0, % 0 deg = right
+		reversed,
+		align=left,
+		parent anchor=east,
+		child anchor=west,
+		anchor=west,
+		edge path={
+			\noexpand\path[draw, ptclredge, line width=1.2pt, \forestoption{edge}]
+			(!u.parent anchor) |- (.child anchor)\forestoption{edge label};
+		},
+		before typesetting nodes={
+			if content={}{shape=coordinate}{}
+		},
+	} % </tree layout>
+	
+	% TREE CONTENT
+	
+\end{forest}

forest/test.forest

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+[
+	[Procaryota]
+	[
+		[Eucaryota]
+		[Archea]
+		[some more garbage]
+	]
+]

forest/test.tex

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+%c reated by phylo-tree from test.forest
+
+
+\documentclass[tikz, crop, border=5pt]{standalone}
+\usepackage{forest}
+
+\usepackage{fontspec,xltxtra,xunicode}
+
+% English Fonts
+\setmainfont[BoldFont={Fira Sans}]{Fira Sans Light}
+
+% 中文字体
+\usepackage{xeCJK}
+\setCJKmainfont[BoldFont=Hiragino Sans GB W6]{Hiragino Sans GB W3}
+\xeCJKsetup{CJKecglue = {\hskip 0pt plus 0.08\baselineskip}, xCJKecglue = {false}}
+\punctstyle{plain}
+\defaultfontfeatures{Mapping=tex-text,Scale=MatchLowercase}
+
+\definecolor{red}{RGB}{188,36,46}
+\definecolor{black}{RGB}{26,25,25}
+\definecolor{grey}{RGB}{129,130,132}
+\definecolor{green}{RGB}{32,128,108}
+\definecolor{purple}{RGB}{160,90,150}
+
+\tikzset{
+    comment/.append  style={label={[font=\small]0:#1}},
+}
+\forestset{
+    /tikz/label position=below left,
+    /tikz/label distance=.1em,
+    dot/.style={tikz+={\fill[fill=#1] (.child anchor) circle[radius=2pt];}},
+    dot/.default=black,
+    bar/.style={tikz+={\draw[color=#1,line width=2pt] let \p1 = (!u.parent anchor), \p2 = (.child anchor) in ($(\x1, \y2 - 0.5em)!0.5!(\x2, \y2)$) -- ($(\x1, \y2 + 0.5em)!0.5!(\x2, \y2)$);}},
+    bar/.default=black,
+}
+
+\begin{document}
+
+\begin{forest}
+    where n children=0{tier=word}{},
+    for tree={
+        s sep=-0.1em, % make siblings closer
+        grow=0, % 0 degrees is to the right
+        reversed, % tree_direction
+        align=left,
+        parent anchor=east,
+        child anchor=west,
+        anchor=west,
+        edge path={
+            \noexpand\path[draw, grey, line width=1pt, \forestoption{edge}]
+                (!u.parent anchor) |- (.child anchor)\forestoption{edge label};
+        },
+        before typesetting nodes={
+            if content={}{shape=coordinate}{}
+        },
+    }
+[
+	[a]
+	[
+		[b]
+		[b
+			[c]
+			[c
+				[d]
+				[d]
+			]
+		]
+	]
+]
+\end{forest}
+
+\end{document}

forest/treeconf.tex

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+% BEGIN treeconf.tex
+where n children=0{tier=word}{},
+for tree = {
+	s sep=-0.1em,
+	grow = 0, % 0 deg = right
+	reversed,
+	align=left,
+	parent anchor=east,
+	child anchor=west,
+	anchor=west,
+	edge path={
+		\noexpand\path[draw, ptclredge, line width=1.2pt, \forestoption{edge}]
+		(!u.parent anchor) |- (.child anchor)\forestoption{edge label};
+	},
+	before typesetting nodes={
+		if content={}{shape=coordinate}{}
+	},
+} % END treeconf.tex

jjpackages.tex

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+%#######################################
+% jjpackages.tex
+% generic include for common LaTeX packages
+% @author Jeff J
+% usage: \input{jjpackages.tex}
+%
+% v0.1 2024-05
+%#######################################
+
+
+% ### DOCUMENTCLASS & LANGUAGE #########
+
+\documentclass[a4paper, 12pt, german]{article}
+\usepackage{geometry}
+
+\usepackage[utf8]{inputenc}
+\usepackage[T1]{fontenc}
+
+\usepackage[german]{babel}
+
+
+% ### MISC #############################
+
+\usepackage{hyperref}
+% \usepackage[implicit=false]{hyperref} % disable color conversions for printing
+\hypersetup{
+  pdftitle = {Botanik \& Systematik der Pflanzen},
+  pdfauthor = {Jeff Jonczyk},
+  pdfsubject = {},
+  pdfkeywords = {},
+  colorlinks = false,
+  urlcolor = blue,
+  linkcolor = cyan,
+  citecolor = brown,
+  filecolor = magenta
+  pagebackref = true
+  linktoc = all
+  }
+  
+\usepackage{url}
+\usepackage{pdfpages}
+
+\usepackage{ragged2e}
+\usepackage{parskip}
+% \usepackage[skip=12pt, indent=30pt, parfill=50pt]{parskip}
+\usepackage{setspace}
+
+
+% ### FONTS & COLORS ###################
+
+\usepackage[table]{xcolor}
+
+%\usepackage{lmodern} %modern font-family
+%\usepackage{mathptmx} %times ff that also works in math mode
+
+\usepackage{titlesec} % allows heading customisation
+
+% options for stiketrough
+% \usepackage{soul}
+% \usepackage{ulem}
+% \usepackage{cancel}
+
+
+% ### COMMENTS & CODE ##################
+
+% \usepackage{comment}
+\usepackage{verbatim}
+
+%\usepackage{minted}
+
+
+% ### IMAGES & FIGURES #################
+
+\usepackage{graphicx}
+%\usepackage{wrapstuff}
+
+
+% ### TABLES ###########################
+
+\usepackage{multirow}
+
+
+% ### LISTS ############################
+
+% \usepackage{enumerate}
+% \usepackage{paralist} % provides compactitem, compactenum enviroments
+
+\usepackage{enumitem}
+
+
+% ### REFERENCES #######################
+
+%\usepackage{cleveref} % ! For some reason must be loaded after ansmath; see below
+%\usepackage{showkeys}
+
+
+% ### MATH #############################
+
+\usepackage{amsmath}
+\usepackage{pgfplots}
+
+
+
+\usepackage{cleveref} % technically belongs to REFERENCES, but must be loaded after ansmath

trees/basetree.tex

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+% phyloforest-template.tex
+% Template for a phylogenetic tree using forest
+\begin{forest}
+	% <tree layout>
+	where n children=0{tier=word}{},
+	for tree = {
+		s sep=-0.1em,
+		grow = 0, % 0 deg = right
+		reversed,
+		align=left,
+		parent anchor=east,
+		child anchor=west,
+		anchor=west,
+		edge path={
+			\noexpand\path[draw, treeedgeclr, line width=1.2pt, \forestoption{edge}]
+			(!u.parent anchor) |- (.child anchor)\forestoption{edge label};
+		},
+		before typesetting nodes={
+			if content={}{shape=coordinate}{}
+		},
+	} % </tree layout>
+	[, label=Animalia, dot
+		[Ctenophora]
+		[, label=NOTE, bar=red
+			[\color{green}{Porifera}]
+			[, label=\color{green}{Parahoxozoa}, dot=red
+				[Placozoa]
+				[, label=Planulozoa, dot=red
+					[Bilateria]
+					[Cnidaria]
+				]
+			]
+		]
+	]	
+\end{forest}